Lindsey Allin, Collin Hansen, Isaac Lundergan
Summit Technology Academy, Lee’s Summit, MO
Submitted on 28 April 2018; Revised on 25 May 2018; Published on 22 October 2018
With help from the 2018 BioTreks Production Team.
The artificial silk has the potential to revolutionize the biomaterials industry. Artificial silk could be applied in protective clothing, human tissue repair, such as tendon repair and ligament repair. The silk proteins allow to programme and change the strength and tension properties of biomaterials.. The gene coding for honey bee silk protein was used because it has fewer DNA sequence repeats and the sequence is shorter than more well known producers such as spiders and silkworms. Producing artificial honey bee silk would be advantageous because it holds potential to downstream applications in the biomaterials industry. The artificial silk gene was cloned into pUC19 vector, followed by transformation and expression in Escherichia coli. Keywords: biomaterial, honey bee silk, artificial silk Authors are listed in alphabetical order. Kevin McCormick mentored the group. Please direct all correspondence
The artificial silk has the potential to revolutionize the biomaterials industry. Artificial silk could be applied in protective clothing, human tissue repair, such as tendon repair and ligament repair. The silk proteins allow to programme and change the strength and tension properties of biomaterials.. The gene coding for honey bee silk protein was used because it has fewer DNA sequence repeats and the sequence is shorter than more well known producers such as spiders and silkworms. Producing artificial honey bee silk would be advantageous because it holds potential to downstream applications in the biomaterials industry. The artificial silk gene was cloned into pUC19 vector, followed by transformation and expression in Escherichia coli.
Keywords: biomaterial, honey bee silk, artificial silk
Authors are listed in alphabetical order. Kevin McCormick mentored the group. Please direct all correspondence to email@example.com.
Artificial silk has a long list of potential uses, ranging from stronger fishing lines, to repairing tendons within the body. Some of the other endless possibilities of artificial silk could include bulletproof clothing, musical instrument strings, repairs in human body tissues, and protective helmets. Since artificial silk is a non-toxic biomaterial, synthesised by a living organism, it is eco-friendly and safe for humans. Generally the body does not recognize biomaterials as toxic so there is no reaction (ASM International Team, 2003). Artificial silk is composed of crystalline beta sheets responsible for its non-toxic property (Vepari, Kaplan, 2007). They have been used in in vitro and in vivo studies have proved to be compatible (Vepari, Kaplan, 2007). Artificial silk can not help with the amount of violence people face, but it could help with protection from bullets and debris. It could be used for protective and bulletproof clothing.. Spider silk proteins on their own have one sixth the strength of steel. However, if the silk is layered and wrapped together, it has potential to match up in durability, while weighing less (Bhanoo, 2014). This means that if the artificial silk were processed into clothing, it would not be overly heavy and it would be light weight like normal silk, yet with far greater strength.
Honey bees (Apis mellifera) create silk from the process of making an insoluble filament from a protein solution. As this insect turns its head in different directions, the labial gland starts spinning silk (Hepburn, 2013). The labium–hypopharynx and the spinneret is the spot where the silk exits from the bee’s insect body. The silk ends up being 3 μm in diameter. The silk is made up of α-helical proteins assembled into ordered coiled-coil structures (Hepburn, 2013). Honey bee silk is made up to be extended β-sheets (Hepburn, 2013).The hydration in the silk loosens the interaction between neighboring crystalline regions thereby reducing stiffness. Potentially, by looking at how hydrated a cell is, the strength could be inferred.
Since artificial silk is a biomaterial it could be used in human medical applications. This could help with tendon and ligament repair, because the strength could be adjusted. Artificial silk could also be used for stitches, which would make taking stitches out less painful, and patients would be less susceptible to infections entering the wound.
The goal of this project is to produce artificial silk using the silk gene from honey bees. A plasmid containing the silk coding gene will be inserted into Escherichia coli through transformation, consequently expressed and artificial silk could be mass produced and used for all the advantages it has to offer.
Materials and Methods
The goal of this work is to insert the gene responsible for producing honey bee protein silk into a plasmid (pUC19) then to have it transformed in E.coli and express the silk protein. It starts off with preparing the Luria-Bertani (LB) culture broth supplemented with ampicillin to grow E. coli transformed cells.. The pUC19 is then inserted into E. coli and then E. coli cells are incubated in LB broth plus ampicillin. After this, the plasmid is extracted from transformed cells and goes through digestion to be loaded and isolated into the gel bed. The liquid for the gel has to be made and set in the mold. Once the gel bed is ready for electrophoresis, the deoxyribonucleic acid (DNA) ladder is loaded, as well as the suspended plasmid after has been mixed with loading dye. After the gel bed is run, it will show where the extracted pUC19 is by comparing with the running profile of the DNA ladder fragments. The plasmid will then be cut out of the gel bed using a DNA clean up kit for later use. The gel of the bed must be purified in order to extract plasmid from the gel bed. Once sole DNA is obtained it will be prepped to 1000 ng and the pUC19 cloned with the silk gene through Gibson Assembly. After that, the plasmid is transformed in E.coli cells, which should start to express the silk gene present in the plasmid. Since bacteria multiply fast, it should create many copies of the plasmid that now has the honey bee silk gene and express that DNA. The DNA must be checked to make sure the gene of interest is being exposed, and then it will be run through another gel bed. Once the protein is produced and expressed, the silk protein will be extracted and purified through dialysis tubing. When the silk reaches a certain concentration, the strength can be tested. The Monarch Plasmid Miniprep Kit (NEB, USA), Bio-Rad EZ Load 170-8356, Purple Loading Dye (NEB), Carolina BioClave,Corning Benchtop Shaking Incubator, and NEBC2987 bacteria were used in our experiments.
Plasmid Digestion Results
To ensure that the plasmid digestion step went correctly our group made up a gel bed to show base pair matching of the pUC19 DNA sequence. The first gel bed did not show proper results, in fact noDNA dying was detected. The DNA ladder did not show up and neither did the pUC19. There was another group sharing our lab that used a 2% gel bed, so we thought we would try it as well since we were not having the best luck with yielding results. Although the agarose gel chart said a 2% gel bed would work best for sequences between 50-2,000, the ladder showed up for us, along with bands from our DNA sample (Figure 1A). We compared the bands from our digested plasmid with the ladder and thought we had the right amount. Since the ladder used only indicated up to 1,000 base pairs, we had to create a graph and an equation to find the length of the DNA sample used (Figure 1B). We used Google Sheets to generate a log transformed equation to work with the easier equation of y = mx + b. We looked at the distance travelled from the ladder, since we already knew the base pair matches. We found that we had digested our plasmid correctly because the base pair matching was around 2800 bp.
Gibson Assembly Results
To see results of Gibson Assembly we had to make LB broth and ampicillin plates. We made two plates, one for the control and one for transformed plasmid from Gibson Assembly. Then we transform the plasmid created from Gibson Assembly into E. coli and put it into the incubator overnight. We then transferred the E. coli cells onto the LB broth and ampicillin plates. We put unmodified pUC19 on a different plate to use as a control, since it did not contain the honey bee silk gene (Figure 2). Our team discovered that when we were designing the plasmid, the BsaI cut site was in the ampicillin resistant coding sequence of the plasmid. Since this happened the protein was not assembled correctly, so the cells could not go through transformation.
We failed to meet our objective, not because of any of the difficulties we had foreseen as possible problems, but because of gel bed deficiencies at first, which slowed us down greatly. Then, we based our cut site on a version of the pUC19 plasmid that was different from the one we had to use, which resulted in the cutting of the antibiotic resistance gene. When this lab is performed in the future, BsaI must be placed somewhere on the plasmid where there is non-coding DNA so important parts of the plasmid, like the ampicillin resistance gene in this case, is not cut.
This is not all, or really at all, a bad thing. We’ve learned more, gained more experience with every failure. We better understand how to use materials and equipment that once confused us. As an opportunity to learn and grow, this has been a complete success.
We are grateful to Brent Buckner, professor of biology at Truman State University. Dr. Buckner gave suggestions about using a mutated yeast cell to improve the chances of cellular transcription. We also appreciate the assistance of Rachel Backes, a biology teacher at Lee’s Summit Senior High School, who helped us with our lab write up techniques.
Bhanoo, S. N.. Arachnids: Untangling the Mystery of Spider Silk. New York Times, p. D2(L). 2014, Aug 12 [Cited 2018 September 10]. Available from https://bit.ly/2QjmVFX.
Hepburn HR, Pirk CWW, Duangphakdee O. Material Properties of Honeybee Silk. Honeybee Nests: Composition, Structure, Function. Berlin, Heidelberg: Springer Berlin Heidelberg; 2014. p. 367-82.
Holmes RK, Jobling MG. Genetics. In: Baron S, editor. Medical Microbiology. 4th edition. Galveston (TX): University of Texas Medical Branch at Galveston; 1996. Chapter 5.Available from: https://bit.ly/2xMTYe2.
Kronqvist N, Sarr M, Lindqvist A, Nordling K, Otikovs M, Venturi L, et al. Efficient protein production inspired by how spiders make silk. Nature Communications. 2017;8:15504. doi: 10.1038/ncomms15504.
Larracas C, Hekman R, Dyrness S, Arata A, Williams C, Crawford T, et al. Comprehensive Proteomic Analysis of Spider Dragline Silk from Black Widows: A Recipe to Build Synthetic Silk Fibers. International Journal of Molecular Sciences. 2016;17(9):1537. doi:10.3390/ijms17091537.
Lazaris A, Arcidiacono S, Huang Y, Zhou J-F, Duguay F, Chretien N, et al. Spider Silk Fibers Spun from Soluble Recombinant Silk Produced in Mammalian Cells. Science. 2002;295(5554):472-6. doi: 10.1126/science.1065780.
Lodish H, Berk A, Zipursky SL, et al. Molecular Cell Biology. 4th edition. New York: W. H. Freeman; 2000. Section 7.1, DNA Cloning with Plasmid Vectors. Available from: https://bit.ly/2paTXvc.
Malay AD, Arakawa K, Numata K. Analysis of repetitive amino acid motifs reveals the essential features of spider dragline silk proteins. PloS one. 2017;12(8):e0183397. doi: 10.1371/journal.pone.0183397.
Peng Q, Zhang Y, Lu L, Shao H, Qin K, Hu X, et al. Recombinant spider silk from aqueous solutions via a bio-inspired microfluidic chip. Scientific Reports. 2016;6:36473. doi: 10.1038/srep36473
Pyhtila, B. . Plasmids 101: Gibson Assembly and Other Long-Homology Based Cloning Methods. Add Gene, The nonprofit Plasmid Repository. 2016, Mar 1 [Cited 2018 September 10]; Available from: https://bit.ly/2irFs72
Sutherland TD, Church JS, Hu X, Huson MG, Kaplan DL, Weisman S. Single Honeybee Silk Protein Mimics Properties of Multi-Protein Silk. PloS one. 2011;6(2):e16489. doi: 10.1371/journal.pone.0016489.
Tucker, P. (2017, August 02). US Army Boosts Spending on Genetically Engineered Spider Silk for Body Armor, Underwear. 2018, Jan 5 [Cited 2018 September 10]; Available from https://bit.ly/2uVdqnz.
Walker, M. (2015, August 27). Weaving a smarter future with bee silk. 2018 Feb 12 [Cited 2018 September 10]; Available from https://bit.ly/2NsDIYH.
Weisman S, Haritos VS, Church JS, Huson MG, Mudie ST, Rodgers AJW, et al. Honeybee silk: Recombinant protein production, assembly and fiber spinning. Biomaterials. 2010;31(9):2695-700. doi: 10.1016/j.biomaterials.2009.12.021.
Vascalones, Y. (2014, February). Laboratory webs. 2018, Jan 31 [Cited 2018 September 10]; Available from https://bit.ly/2KXzhkp
Vepari C, Kaplan DL. Silk as a biomaterial. Progress in Polymer Science. 2007;32(8):991-1007. doi: 10.1016/j.progpolymsci.2007.05.013.
Herold, Heike M. and Thomas Scheibel. “Applicability of biotechnologically produced insect silks” Zeitschrift für Naturforschung C, 72.9-10 (2017): 365-385. doi:10.1515/znc-2017-0050